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    • Eukaryota5827 eukaryotes A.californica, Acanthamoeba castellanii str. Neff, Acanthoscelides obtectus, Acyrthosiphon pisum, A.gambiae, Akanthomyces lecanii RCEF 1005, A.mellifera, Anopheles sinensis, Aphanomyces astaci, Araneus ventricosus, Aspergillus pseudonomiae, A.thaliana, Aureobasidium pullulans, Austrofundulus limnaeus, Austropuccinia psidii MF-1, Babesia bigemina, Balaeniceps rex, Beauveria bassiana D1-5, black-legged tick, B.mori, Bombus impatiens, Brassica carinata, Cadophora sp. DSE1049, Callipepla squamata, Candida viswanathii, Canis lupus familiaris, Carassius auratus, C.elegans, Chicken, Chondrus crispus, C.intestinalis, Coccidioides immitis RS, Coccomyxa subellipsoidea C-169, Colletotrichum fructicola Nara gc5, Coniochaeta sp. 2T2.1, C.reinhardtii, Cryptococcus amylolentus CBS 6039, Cryptosporidium muris RN66, Culex quinquefasciatus, Cystoisospora suis, Daphnia magna, Dendrothele bispora CBS 962.96, Dictyostelium purpureum, D.melanogaster, Eimeria tenella, Elephant, Erinaceus europaeus, Eumeta japonica, Exophiala aquamarina CBS 119918, Falco tinnunculus, Fusarium oxysporum, Fusarium oxysporum f. sp. lycopersici 4287, Gigaspora rosea, Glossina fuscipes, Glycine max, Gossypium barbadense, Green Anole, Guinea pig, Hamiltosporidium tvaerminnensis, Hanseniaspora osmophila, Helicocarpus griseus UAMH5409, Hirsutella rhossiliensis, Hirundo rustica rustica, H.sapiens, Hydra, Jewel wasp, Kwoniella bestiolae CBS 10118, Lachancea lanzarotensis, Leishmania donovani, Leptomonas pyrrhocoris, Lophotis ruficrista, Macaca mulatta, Mais, Meloidogyne enterolobii, Metarhizium robertsii ARSEF 23, Microbotryum saponariae, Micromonas commoda, Microsporum canis CBS 113480, Millerozyma farinosa CBS 7064, M.musculus, Mytilus edulis, Neocallimastix californiae, Neurospora crassa OR74A, Nicotiana tabacum, Nitzschia inconspicua, Octopus, Olea europaea subsp. europaea, Ooceraea biroi, Oreochromis niloticus, Paramecium tetraurelia, Paramuricea clavata, Pararge aegeria aegeria, Penicillium rubens Wisconsin 54-1255, Pestalotiopsis fici W106-1, Physeter catodon, Phytophthora fragariae, Pichia kudriavzevii, Pig, Pisolithus tinctorius Marx 270, Plasmodium falciparum 3D7, Plasmodium knowlesi strain H, Plasmodium yoelii, Platyfish, Platypus, Pochonia chlamydosporia 170, Polarella glacialis, Polychaeton citri CBS 116435, Polyporus brumalis, Populus tomentosa, Potato, Pseudogymnoascus sp. VKM F-4518 (FW-2643), Pseudogymnoascus sp. VKM F-4520 (FW-2644), P.troglodytes, Pyrenophora tritici-repentis, Pyrus ussuriensis x Pyrus communis, Python bivittatus, Rat, Rhizopus azygosporus, Rhizopus delemar RA 99-880, Rhodotorula toruloides, Rice, Saccharomyces cerevisiae S288C, Saitozyma podzolica, Sarcophilus harrisii, Talaromyces stipitatus ATCC 10500, Theileria equi strain WA, Trichoderma virens Gv29-8, Trypanosoma cruzi, T.truncatus, Ustilago trichophora, Wheat, Wickerhamomyces anomalus NRRL Y-366-8, Xenopus laevis, X.tropicalis, Yellow fever mosquito, Zasmidium cellare ATCC 36951, Zebrafish
    • Bacteria17551 Acetobacter tropicalis, Acholeplasma laidlawii PG-8A, Achromobacter xylosoxidans, Acidovorax sp. Root219, Acinetobacter baumannii, Actinomadura darangshiensis, Actinomyces oris, Actinoplanes sp. ATCC 53533, Adhaeribacter arboris, Aerococcus urinae, Aeromicrobium endophyticum, Aeromonas veronii, Afipia sp. GAS231, Agrobacterium fabrum str. C58, Agromyces sp. Soil535, Alcanivorax nanhaiticus, Algoriphagus locisalis, Alicyclobacillus ferrooxydans, Alistipes onderdonkii, Altererythrobacter sp. Root672, Alteromonas alba, Alteromonas sp. RKMC-009, Amycolatopsis mediterranei U32, Anaerococcus nagyae, Anaerococcus octavius, Anaerosphaera multitolerans, Aneurinibacillus migulanus, Anoxybacillus sp. B7M1, Aquimarina aggregata, Arcobacter nitrofigilis DSM 7299, Arenimonas terrae, Arthrobacter terricola, Asticcacaulis sp. AC460, Atopobium sp. oral taxon 199 str. F0494, Aurantiacibacter xanthus, Aureimonas sp. AU20, Azospirillum palustre, Bacillus anthracis, Bacteroides uniformis, Bartonella apis, Bifidobacterium adolescentis, Bilophila wadsworthia 3_1_6, Blattabacterium sp. (Cryptocercus kyebangensis), Blautia obeum, Bordetella genomosp. 10, Borrelia turcica IST7, Borreliella burgdorferi B31, Bosea thiooxidans, Brachybacterium alimentarium, Brachyspira hyodysenteriae ATCC 27164, Bradyrhizobium canariense, Brenneria goodwinii, Brevibacillus reuszeri, Brevibacterium aurantiacum, Brevundimonas sp. BAL3, Brevundimonas sp. LM2, B.subtilis, Buchnera aphidicola str. Bp (Baizongia pistaciae), Burkholderia cenocepacia, Butyrivibrio fibrisolvens DSM 3071, Caldicellulosiruptor hydrothermalis 108, Campylobacter coli, Candidatus Blochmannia pennsylvanicus str. BPEN, Candidatus Kinetoplastibacterium desouzaii TCC079E, Candidatus Liberibacter asiaticus str. psy62, Candidatus Pelagibacter sp. HTCC7211, Candidatus Rhodobacter lobularis, Candidatus Solibacter usitatus Ellin6076, Candidatus Thiodictyon syntrophicum, Capnocytophaga sputigena, Carnobacterium maltaromaticum LMA28, Caulobacter flavus, Cellulomonas sp. Leaf334, Chlamydia pneumoniae, Chlorobium phaeobacteroides DSM 266, Chloroherpeton thalassium ATCC 35110, Chromobacterium haemolyticum, Chryseobacterium carnipullorum, Citrobacter freundii, Cloacibacillus porcorum, Clostridiaceae bacterium, Clostridioides difficile 630, Clostridium beijerinckii, [Clostridium] scindens ATCC 35704, Clostridium sp., Collinsella tanakaei YIT 12063, Colwellia sp. Bg11-28, Comamonas testosteroni KF-1, Comamonas thiooxydans, Coriobacteriaceae bacterium CHKCI002, Corynebacterium glutamicum ATCC 13032, Crenobacter intestini, Criblamydia sequanensis CRIB-18, Cronobacter turicensis, Cryobacterium roopkundense, C.tepidum, Cupriavidus sp. P-10, Curtobacterium sp. MCBD17_040, Cutibacterium acnes, Cyanothece sp. PCC 7425, Dankookia rubra, Deinococcus hopiensis KR-140, Desulfamplus magnetovallimortis, Desulfosarcina widdelii, Desulfosporosinus orientis DSM 765, Desulfotomaculum copahuensis, Desulfovibrio sp. U5L, Devosia limi DSM 17137, Dysgonomonas gadei ATCC BAA-286, Echinicola strongylocentroti, E.coli, Edaphobacter modestus, Edwardsiella tarda, Eggerthella lenta DSM 2243, Ehrlichia chaffeensis str. Arkansas, Eisenbergiella tayi, endosymbiont GvMRE of Glomus versiforme, Enterobacter hormaechei, Enterococcus faecalis, Erwinia persicina, Erysipelotrichaceae bacterium 2_2_44A, Erythrobacter aureus, Escherichia coli K-12, Eubacterium plexicaudatum ASF492, Exiguobacterium aurantiacum, Exilibacterium tricleocarpae, Fimbriiglobus ruber, Flavobacterium crocinum, Flavobacterium johnsoniae UW101, Francisella tularensis subsp. tularensis SCHU S4, Frankia sp. CcI49, Fuerstiella marisgermanici, Fusobacterium ulcerans, Geobacter sp. M18, Glaciecola sp. 33A, Gloeothece verrucosa PCC 7822, Gordonia rhizosphera NBRC 16068, Granulosicoccus antarcticus IMCC3135, Hahella sp. KA22, Halomonas salipaludis, Haloplasma contractile SSD-17B, Helicobacter saguini, Herbaspirillum huttiense, Humibacillus sp. DSM 29435, Hydrogenivirga sp. 128-5-R1-1, Hydrogenovibrio crunogenus, Hydrogenovibrio sp. SC-1, Hymenobacter crusticola, Hyphomicrobium facile, Hyphomonas oceanitis SCH89, Idiomarina loihiensis L2TR, Inquilinus limosus, Jannaschia seohaensis, Janthinobacterium lividum, Kibdelosporangium aridum, Kitasatospora aureofaciens, Klebsiella pneumoniae subsp. pneumoniae, Knoellia aerolata DSM 18566, Kocuria flava, Kribbella pittospori, Ktedonosporobacter rubrisoli, Labrenzia sp. VG12, Lacinutrix sp. Bg11-31, Lacticaseibacillus paracasei, Lactobacillus amylovorus, Legionella taurinensis, Leifsonia sp. Leaf336, Leptolyngbya sp. NIES-3755, Leptospira kmetyi, Leptotrichia sp. OH3620_COT-345, Leucobacter sp. wl10, Leuconostoc kimchii IMSNU 11154, Leucothrix pacifica, Listeria booriae, Loktanella atrilutea, Lucifera butyrica, Luteimonas gilva, Lysinibacillus fusiformis, Lysinibacillus xylanilyticus, Lysobacter enzymogenes, Malonomonas rubra DSM 5091, Mannheimia haemolytica, Maribacter algarum, Marinobacterium lutimaris, Marinobacter nanhaiticus D15-8W, Marinomonas polaris DSM 16579, Martelella mediterranea DSM 17316, Massilia violaceinigra, Megasphaera elsdenii, Meiothermus ruber DSM 1279, Merismopedia glauca CCAP 1448/3, Mesorhizobium waimense, Methylobacterium nodulans ORS 2060, Methylomonas denitrificans, Methylomonas methanica, Methylophaga nitratireducenticrescens, Methyloversatilis universalis FAM5, M.genitalium, Microbacterium sp. No. 7, Microvirga ossetica, Moorena producens PAL-8-15-08-1, Moraxella caviae, Motiliproteus sp. MSK22-1, Mucilaginibacter paludis DSM 18603, Mycobacterium intermedium, Mycolicibacterium smegmatis MC2 155, Mycoplasma marinum, Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis, Neisseria dentiae, Niastella vici, Nitratireductor sp. StC3, Nitrosomonas communis, Nocardia seriolae, Nocardioides immobilis, Nocardiopsis flavescens, Nonlabens dokdonensis DSW-6, Nonomuraea zeae, Nostoc flagelliforme CCNUN1, Novimethylophilus kurashikiensis, Novosphingobium resinovorum, Oceanispirochaeta sp. M1, Oceanobacillus oncorhynchi, Olsenella profusa F0195, Opitutaceae bacterium TAV5, Oscillibacter sp. 1-3, Paenibacillus ferrarius, Pandoraea pnomenusa, Pantoea agglomerans, Pantoea cypripedii, Paraburkholderia terrae, Paracholeplasma brassicae, Paracoccus versutus, Paraglaciecola sp. MB-3u-78, Paraprevotella clara YIT 11840, Pectobacterium parmentieri, Pediococcus acidilactici, Pedobacter sp. KBW06, Pelobacter propionicus DSM 2379, Pelodictyon phaeoclathratiforme BU-1, Peptococcaceae bacterium CEB3, Peptoniphilus asaccharolyticus DSM 20463, Peptoniphilus harei, Persicimonas caeni, P.fluorescens, Phaeobacter sp. 22II1-1F12B, Photobacterium rosenbergii, Pimelobacter simplex, Planococcus glaciei, Polaribacter reichenbachii, Pontibacillus marinus BH030004 = DSM 16465, Pontibacter diazotrophicus, Porphyrobacter sp. CACIAM 03H1, Porphyromonas macacae, Prevotella dentalis DSM 3688, Prochlorococcus marinus str. MIT 9313, Providencia huaxiensis, Providencia rettgeri, Pseudoalteromonas ruthenica, Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933, Pseudoduganella namucuonensis, Pseudomonas thivervalensis, Pseudonocardia sp. MH-G8, Pseudorhodobacter turbinis, Pseudoxanthomonas winnipegensis, Psychrobacter sp. Sarcosine-3u-12, Psychromonas sp. Urea-02u-13, Psychroserpens sp. NJDZ02, Ralstonia insidiosa, Ralstonia pseudosolanacearum, Rhizobium leguminosarum, Rhodococcus sp. LB1, Rhodoplanes sp. Z2-YC6860, Rhodopseudomonas sp. AAP120, Rickettsia bellii RML369-C, Rickettsiales bacterium Ac37b, Roseobacter litoralis Och 149, Roseovarius indicus, R.typhi, Ruegeria atlantica, Ruminiclostridium hungatei, Ruminococcus sp. AF31-8BH, Saccharomonospora marina XMU15, Salinicoccus roseus, Salmonella enterica subsp. enterica serovar Typhi, Sanguibacteroides justesenii, Scytonema hofmannii PCC 7110, Segatella copri DSM 18205, Selenomonas ruminantium subsp. lactilytica TAM6421, Serratia marcescens, S.haemolyticus, Shewanella psychrophila, Shewanella xiamenensis, Sinorhizobium meliloti 1021, Solidesulfovibrio carbinolicus, Sphingobacterium athyrii, Sphingobium yanoikuyae, Sphingomonas koreensis, Sphingopyxis macrogoltabida, Spiribacter halobius, Spiroplasma citri, Spirosoma pollinicola, Sporomusa silvacetica DSM 10669, Sporosarcina globispora, Staphylococcus devriesei, Stenotrophomonas maltophilia, Strawberry lethal yellows phytoplasma (CPA) str. NZSb11, Streptacidiphilus jiangxiensis, Streptococcus pneumoniae, Streptomyces lincolnensis, Suicoccus acidiformans, Sulfitobacter sp. SK012, Sulfurospirillum diekertiae, Synechococcus sp. PCC 7335, Synechocystis sp., Tahibacter aquaticus, T.denticola, Tenacibaculum sp. MAR_2009_124, Tetrasphaera japonica T1-X7, Thauera sp. K11, Thermoanaerobacteraceae bacterium SP2, Thermotoga maritima MSB8, Thermus oshimai JL-2, Thioalkalivibrio denitrificans, Tissierella sp. P1, Treponema primitia ZAS-2, Tumebacillus flagellatus, Variovorax sp. WS11, Veillonella seminalis ACS-216-V-Col6b, Vibrio harveyi, Vibrio splendidus, Virgibacillus pantothenticus, Weissella cibaria, Wolbachia endosymbiont of Folsomia candida, Xanthomonas arboricola, Xanthomonas arboricola pv. juglandis, Xenorhabdus mauleonii, Yersinia pestis
    • Archaea607 Archaeoglobus fulgidus DSM 4304, Archaeoglobus sulfaticallidus PM70-1, Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1, Candidatus Nitrosocosmicus oleophilus, Desulfurococcus amylolyticus DSM 16532, Ferroglobus placidus DSM 10642, Ferroplasma acidiphilum, Haladaptatus paucihalophilus DX253, Haloarcula sinaiiensis ATCC 33800, Halobacterium hubeiense, Halococcus sp. IIIV-5B, Haloferax mediterranei ATCC 33500, Halogeometricum borinquense DSM 11551, Halolamina sp. CBA1230, Halopiger xanaduensis SH-6, Halorubrum ezzemoulense, Halorubrum sp. SD626R, Haloterrigena turkmenica DSM 5511, Metallosphaera sedula, Methanobacterium formicicum, Methanobrevibacter millerae, Methanobrevibacter olleyae, Methanocaldococcus sp. FS406-22, Methanococcus maripaludis C5, Methanoculleus chikugoensis, Methanohalophilus halophilus, Methanolobus tindarius DSM 2278, Methanoplanus limicola DSM 2279, Methanosarcina barkeri str. Fusaro, Methanosarcina mazei, Methanospirillum lacunae, Natrialba magadii ATCC 43099, Natrinema pellirubrum DSM 15624, Natronobacterium texcoconense, Natronorubrum daqingense, Nitrosopumilus adriaticus, Pyrobaculum aerophilum, Pyrococcus furiosus DSM 3638, Pyrodictium delaneyi, Saccharolobus solfataricus, Staphylothermus marinus F1, Sulfolobus acidocaldarius, Sulfolobus islandicus L.S.2.15, Thermococcus thioreducens
    • Viruses7962 Acanthamoeba polyphaga mimivirus, Acidianus filamentous virus 9, Acidianus spindle-shaped virus 1, Acinetobacter phage Abp1, Adelaide River virus, adeno-associated virus 2, Adeno-associated virus - 7, Affertcholeramvirus CTXphi, Ageratum leaf curl Cameroon alphasatellite, Akabane virus, Andromedavirus blastoid, Asparagus virus 2, Autographa californica nucleopolyhedrovirus, Avian gyrovirus 2, Avian leukosis virus - RSA, Bacillus phage AvesoBmore, Bacillus phage Belinda, Bacillus phage Pavlov, Bacillus phage Pookie, Bacillus phage SP-10, Bacillus phage vB_BceM_Bc431v3, Bamboo mosaic virus satellite RNA, Banana bunchy top virus, Barley yellow dwarf virus GAV, Bat coronavirus, Bdellovibrio phage phiMH2K, Beet soil-borne virus, Black beetle virus, Blotched snakehead virus, Bos taurus papillomavirus 20, Botryotinia fuckeliana partitivirus 1, Bovine hokovirus 1, Bovine leukemia virus, Bovine papular stomatitis virus, Bovine parvovirus 1, Bracoviriform congregatae, Brazilian marseillevirus, Bromus-associated circular DNA virus 1, Campylobacter phage PC14, Canarypox virus, Canis familiaris papillomavirus 6, Cassava brown streak virus, Ceratocystis polonica partitivirus, Changuinola virus, Cherry necrotic rusty mottle virus, Chicken picobirnavirus, Chlamydiamicrovirus Chp1, Choristoneura biennis entomopoxvirus, Citrobacter phage Michonne, Citrus tristeza virus, Cotton leaf curl Multan betasatellite, Cotton leafroll dwarf virus, Cowpea chlorotic mottle virus, Cricket paralysis virus, Cronobacter phage CR9, Cucumber mosaic virus, Cucumber necrosis virus, Cucumis melo alphaendornavirus, Cutavirus, Cyclovirus PK5510, Cyprinid herpesvirus 3, Cystovirus phi6, Deltapapillomavirus 4, Dendrolimus punctatus cypovirus 22, Dendrolimus punctatus densovirus, Diatraea saccharalis densovirus, Diplodia scrobiculata RNA virus 1, Dragonfly-associated circular virus 2, Dragonfly associated gemykibivirus 1, Duck megrivirus, Emaravirus rosae, Enhydra lutris papillomavirus 1, Enquatrovirus N4, Enterobacteria phage PRD1, Enterobacteria phage UAB_Phi87, Enterovirus J, Epizootic haematopoietic necrosis virus, Erwinia phage ENT90, Escherichia phage D108, Escherichia phage HK578, Escherichia phage HK629, Escherichia phage JMPW2, Escherichia phage JS98, Escherichia phage MS2, Escherichia phage phi191, Escherichia phage pro147, Escherichia phage RB69, Escherichia phage Stx2 II, Escherichia phage T7, Escherichia phage vB_EcoM_VR26, Escherichia phage vB_EcoP_SU10, Escherichia phage vB_EcoS_AHP42, Escherichia phage VB_EcoS-Golestan, Etheostoma fonticola aquareovirus, European bat lyssavirus 1, Euscelidius variegatus virus 1, Faeces associated gemycircularvirus 14, Feline foamy virus, Fowl aviadenovirus C, Fusarium graminearum hypovirus 1, Gallid alphaherpesvirus 2, Garlic virus A, Gibbon ape leukemia virus, Goose astrovirus, Goose hemorrhagic polyomavirus, Goose parvovirus, Gossypium darwinii symptomless alphasatellite, Graminella nigrifrons virus 1, Grapevine fanleaf virus, Grapevine fleck virus, Grapevine leafroll-associated virus 3, Grapevine Pinot gris virus, Grapevine red blotch virus, Grapevine rupestris stem pitting-associated virus, Grapevine virus G, Gremmeniella abietina mitochondrial RNA virus S2, Gremmeniella abietina RNA virus MS1, Haloarcula hispanica virus PH1, Halorubrum pleomorphic virus 2, Hapavirus flanders, Helminthosporium victoriae virus 190S, Henipavirus nipahense, Hepatitis B virus, Hepatitis C virus genotype 1, Hepatovirus A, Hpunavirus HP1, Huangpi Tick Virus 2, Human adenovirus 54, Human alphaherpesvirus 2, Human alphaherpesvirus 3, Human betaherpesvirus 5, Human betaherpesvirus 6B, Human bocavirus 3, Human gammaherpesvirus 8, Human mastadenovirus C, Human orthopneumovirus, Human papillomavirus 16, Human papillomavirus 4, Human papillomavirus 5, Human parvovirus B19, Human respirovirus 1, Human respirovirus 3, Human T-lymphotropic virus 4, Influenza A virus (A/Puerto Rico/8/1934(H1N1)), Invertebrate iridescent virus 6, Israeli acute paralysis virus, Jaagsiekte sheep retrovirus, JC polyomavirus, Jingmen tick virus, Johnsongrass chlorotic stripe mosaic virus, Kanyawara virus, Kayvirus kay, Klebsiella phage K11, Klebsiella phage KP34, Klebsiella phage Sushi, Koala retrovirus, Kumasi rhabdovirus, Lactobacillus phage phiLdb, Lactococcus phage M6162, Lactococcus phage phi7, Lake Sinai virus, Lederbergvirus P22, Leishmania aethiopica RNA virus, Leptomonas seymouri Narna-like virus 1, Loreto virus, Magnaporthe oryzae chrysovirus 1, Mamastrovirus 10, Mammarenavirus lassaense, Mason-Pfizer monkey virus, Measles morbillivirus, Merkel cell polyomavirus, Middle East respiratory syndrome-related coronavirus, Mirabilis mosaic virus, Moineauvirus Sfi21, Mopeia Lassa virus reassortant 29, Mouse kobuvirus M-5/USA/2010, Munia coronavirus HKU13-3514, Mus musculus papillomavirus type 1, Mycobacterium phage Baee, Mycobacterium phage BigNuz, Mycobacterium phage JAMaL, Mycobacterium phage Job42, Mycobacterium phage Lamina13, Mycobacterium phage Milly, Mycobacterium phage SkiPole, Myxoma virus, Naesvirus bcepNY3, Nam Dinh virus, Nilaparvata lugens honeydew virus 1, Norovirus GII.17, Oat necrotic mottle virus, Odocoileus adenovirus 1, Olive latent virus 3, Orpheovirus IHUMI-LCC2, Orthohantavirus andesense, Ostreococcus lucimarinus virus 7, Pandoravirus inopinatum, Paraiso Escondido virus, Paramecium bursaria Chlorella virus NY2A, Parrot hepatitis B virus, Peach mosaic virus, Pea enation mosaic virus 2, Pea necrotic yellow dwarf alphasatellite 3, Pea necrotic yellow dwarf virus, Peanut bud necrosis virus, Pegivirus suis, Pelargonium flower break virus, Pelargonium line pattern virus, Pepper mild mottle virus, Pestivirus giraffe-1 H138, Phomopsis longicolla hypovirus, Phthorimaea operculella granulovirus, Pig stool associated circular ssDNA virus GER2011, Piscine orthoreovirus, Poaceae associated gemycircularvirus 1, Porcine circovirus 2, Porcine coronavirus HKU15, Porcine epidemic diarrhea virus, Porcine parvovirus, Porcine torovirus, Potato virus S, Potato virus X, Propionibacterium phage P100_1, Pseudomonas phage PAE1, Pseudomonas phage vB_PaeM_PAO1_Ab03, Pseudomonas phage vB_Pae_PS44, Pseudomonas phage vB_Pae-TbilisiM32, Pseudoplusia includens densovirus, Red clover mottle virus, Rhizoctonia solani endornavirus 1, Rice stripe mosaic virus, Rift Valley fever virus, Rotavirus A, Saccharomyces 20S RNA narnavirus, Saccharomyces cerevisiae virus L-A, Salasvirus phi29, Salmonella phage 38, Salmonella phage BP12B, Salmonella phage Jersey, Salmonella phage Shivani, San Miguel sea lion virus 8, Sanxia Water Strider Virus 1, Sapovirus Hu/Dresden/pJG-Sap01/DE, Sclerotinia sclerotiorum fusarivirus 1, Shallot yellow stripe virus, Shapirovirus cbk, Shigella phage pSb-1, Shuangao Bedbug Virus 2, Simian hemorrhagic fever virus, Simian immunodeficiency virus SIV-mnd 2, Sinsheimervirus phiX174, Soil-borne wheat mosaic virus, Solenopsis invicta virus 2, Southern elephant seal virus, Southern rice black-streaked dwarf virus, Southern tomato virus, Soybean chlorotic mottle virus, Sripur virus, Staphylococcus phage 66, Staphylococcus phage StauST398-2, Staphylococcus phage StauST398-3, Streptococcus phage TP-J34, Streptomyces phage Zemlya, Striped jack nervous necrosis virus, Sugarcane yellow leaf virus, Sulfolobus islandicus rod-shaped virus 1, Sulfolobus islandicus rudivirus 3, Sulfolobus virus Ragged Hills, Sweet potato pakakuy virus, Synechococcus phage ACG-2014d, Tenuivirus oryzabrevis, Tequatrovirus T4, Tipula oleracea nudivirus, Tomato chlorosis virus, Tomato necrotic dwarf virus, Tomato severe rugose virus, Torque teno mini virus 12, Torque teno virus 3, Triatoma virus, Turnip yellow mosaic virus, Vaccinia virus, Variegated squirrel bornavirus 1, Velvet tobacco mottle virus, Vesicular stomatitis Indiana virus, Vibrio phage phiVC8, Vicia cryptic virus, Wheat dwarf India virus, Wheat eqlid mosaic virus, Wheat yellow mosaic virus, Wuhan aphid virus 2, Xipdecavirus OP1, Zaire ebolavirus
    Found 1 group
    Bookmark OrthoDB
    The hierarchical catalog of orthologs
    mapping genomics to functional data
    Eukaryotes
    5,827    		 Prokaryotes
    18,158    		 Viruses
    7,962    		 Genes
    162M
    View protein fasta | View CDS fasta | View Tab Delimited
    Group 13962at9989 at Rodentia level
    integrin beta-1  

    Group hierarchy

    Functional descriptions

    Functional Category

    • T: Signal transduction mechanisms
    • G: Carbohydrate transport and metabolism
    • P: Inorganic ion transport and metabolism

    KEGG pathway

    • 1 gene with ko00240: Pyrimidine metabolism
    • 1 gene with ko00983: Drug metabolism - other enzymes
    • 1 gene with ko04260: Cardiac muscle contraction
    • 1 gene with ko04261: Adrenergic signaling in cardiomyocytes
    • 1 gene with ko04740: Olfactory transduction
    • 1 gene with ko04918: Thyroid hormone synthesis
    • 1 gene with ko04960: Aldosterone-regulated sodium reabsorption
    • 1 gene with ko04964: Proximal tubule bicarbonate reclamation
    • 1 gene with ko04970: Salivary secretion
    • 1 gene with ko04971: Gastric acid secretion
    • 1 gene with ko04972: Pancreatic secretion
    • 1 gene with ko04973: Carbohydrate digestion and absorption
    • 1 gene with ko04974: Protein digestion and absorption
    • 1 gene with ko04976: Bile secretion

    GO Molecular Function

    • 15 genes with GO:0005178: integrin binding
    • 15 genes with GO:0001968: fibronectin binding
    • 15 genes with GO:0019960: C-X3-C chemokine binding
    • 15 genes with GO:0098639: collagen binding involved in cell-matrix adhesion

    GO Biological Process

    • 15 genes with GO:0033627: cell adhesion mediated by integrin
    • 15 genes with GO:0007517: muscle organ development
    • 15 genes with GO:0007229: integrin-mediated signaling pathway
    • 15 genes with GO:0016477: cell migration

    GO Cellular Component

    InterPro Domains

    • 15 genes with IPR036465: von Willebrand factor A-like domain superfamily
    • 17 genes with IPR033760: Integrin beta N-terminal
    • 17 genes with IPR002369: Integrin beta subunit, VWA domain
    • 17 genes with IPR014836: Integrin beta subunit, cytoplasmic domain
    • 17 genes with IPR040622: Integrin beta, epidermal growth factor-like domain 1
    • 17 genes with IPR012896: Integrin beta subunit, tail
    • 15 genes with IPR015812: Integrin beta subunit
    • 15 genes with IPR036349: Integrin beta tail domain superfamily
    • 15 genes with IPR032695: Integrin domain superfamily
    • 15 genes with IPR016201: PSI domain
    • 17 genes with IPR013111: EGF-like domain, extracellular

    Evolutionary descriptions

    Phyletic Profile

    • 62 genes in 61 species (out of 61)
    • single copy in 60 species, multi-copy in 1 species

    Evolutionary Rate

    0.89

    Gene Architecture

    Median Protein Length 798 (std. 54.3)
    Median Exon Count 22 (std. 0.7)

    Orthologs by organism

    Organism | Protein ID | UniProt | Description
    AAs
    InterPro
    • Acomys cahirinus, genome GCA_004027535.1 M Cairo spiny mouse
    • Acomys dimidiatus, genome GCA_907164435.1 M
    • Acomys russatus, genome GCF_903995435.1
    • Apodemus sylvaticus, genome GCF_947179515.1 Long-tailed field mouse
    • Arvicanthis niloticus, genome GCF_011762505.1 African grass rat
    • Arvicola amphibius, genome GCF_903992535.2 European water vole
    • Castor canadensis, genome GCF_001984765.1
    • Cavia porcellus, genome GCF_000151735.1 guinea pig
      100719502 Integrin beta
      801
      IPR015812 33760 16201 02369 36465 32695 40622 13111 36349 12896 14836
    • Cavia tschudii, genome GCA_004027695.1 M
    • Chinchilla lanigera, genome GCF_000276665.1
    • Chionomys nivalis, genome GCF_950005125.1 M
    • Cricetulus griseus, genome GCF_003668045.3 Chinese hamsters
    • Dipodomys ordii, genome GCF_000151885.1
    • Dipodomys spectabilis, genome GCF_019054845.1 M
    • Fukomys damarensis, genome GCF_012274545.1 Damara mole rat
    • Grammomys surdaster, genome GCF_004785775.1 M
    • Heterocephalus glaber, genome GCF_000247695.1 naked mole rat
    • Hydrochoerus hydrochaeris, genome GCA_015741225.1 carpincho
    • Ictidomys tridecemlineatus, genome GCF_016881025.1
    • Jaculus jaculus, genome GCF_020740685.1
    • Marmota flaviventris, genome GCF_003676075.2 M
    • Marmota himalayana, genome GCA_005280165.1 M
    • Marmota marmota marmota, genome GCF_001458135.2
    • Marmota monax, genome GCF_021218885.2 M groundhog;woodchucks
    • Mastomys coucha, genome GCF_008632895.1 M
    • Meriones unguiculatus, genome GCF_002204375.1 Mongolian jird
    • Mesocricetus auratus, genome GCF_017639785.1 Syrian golden hamster;Syrian golden hamsters;Syrian hamster
    • Microtus fortis, genome GCF_014885135.2 M
    • Microtus ochrogaster, genome GCF_000317375.1 prairie voles
    • Microtus oregoni, genome GCF_018167655.1 M
    • Mus caroli, genome GCF_900094665.1 M ricefield mouse
    • Mus minutoides, genome GCA_902729475.1
    • Mus musculus, genome GCF_000001635.27 M mouse
    • Mus musculus, genome GCA_921999865.2 mouse
      ITGB1 Integrin beta-1
      798
      IPR015812 33760 16201 02369 36465 32695 40622 13111 36349 12896 14836
    • Mus musculus castaneus, genome GCA_921999005.2 M
    • Mus musculus domesticus, genome GCA_921998345.2 M
    • Mus musculus molossinus, genome GCA_921999095.2 M
    • Mus musculus musculus, genome GCA_921998335.2 M
    • Mus pahari, genome GCF_900095145.1 M Gairdner's shrew-mouse;Gairdner's shrewmouse
    • Mus spretus, genome GCA_921997135.2 M Algerian mouse
    • Myodes glareolus, genome GCF_902806735.1 bank vole
    • Nannospalax galili, genome GCF_000622305.1
    • Neotoma lepida, genome GCA_001675575.1
    • Octodon degus, genome GCF_000260255.1
    • Onychomys torridus, genome GCF_903995425.1
    • Perognathus longimembris pacificus, genome GCF_023159225.1
    • Peromyscus californicus insignis, genome GCF_007827085.1 M
    • Peromyscus eremicus, genome GCF_949786415.1
    • Peromyscus leucopus, genome GCF_004664715.2 M
    • Peromyscus maniculatus bairdii, genome GCF_003704035.1
    • Phodopus roborovskii, genome GCF_943737965.1
    • Psammomys obesus, genome GCA_002215935.2 M
    • Psammomys obesus, genome GCF_907164565.1 M
    • Rattus norvegicus, genome GCA_023515785.1 brown rat;rat;rats
      Beta OL Integrin beta-1
      801
      IPR015812 33760 16201 02369 36465 32695 40622 13111 36349 12896 14836
    • Rattus norvegicus, genome GCF_015227675.2 M brown rat;rat;rats
    • Rattus rattus, genome GCF_011064425.1 M house rat;roof rat
    • Rhizomys pruinosus, genome GCA_009823505.1
    • Sciurus carolinensis, genome GCF_902686445.1 M eastern gray squirrel
    • Sciurus vulgaris, genome GCA_902686455.2 red squirrel
    • Sigmodon hispidus, genome GCA_004025045.1
    • Urocitellus parryii, genome GCF_003426925.1 M
    EZlab BUSCO LEMMI miRmap NewickUtils
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